SNP Profiles matching IMC 85

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 1234567891011121314
_Input profile
TTCCACGTCTGGACCGAGCTAGGGAACC
1._RUQ_8
TTCCACGTCTGGACCGAGTTAGGGAACC
2._RUQ_1634
TTCCACGTCTGGACCGAGTTAGGGAACC
3._RUQ_761
TTCCACGTCTGGACCGAGTTAGGGAACC
4._RUQ_985
TTCCACGTCT-ACCGAGCTGGGGAACC
5._RUQ_1449
TTCCACTTCTGGACCGAGCTAGGGAACC
6._RUQ_8
__ACGTCT_ACCGAGTT__AA_
7._IMC_11
__ACGTCT_ACCGAGTT__AA_
8._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
9._IMC_14
__ACGTCT_AC_AGTT__AA_
10._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
11._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
12._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
13._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
14._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
15._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
16._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
17._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
18._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
19._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
20._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
21._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
22._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
23._GC-04-054-3-18
TTCCACGTCTGGAACGAGTTAGGGAACC
24._RUQ_1056
TTCCCCGTCTGGACCGAGCTAAGGAACC
25._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
26._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
27._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGGCGACCCCCTTGGGGTTCCCC
1._RUQ_8
AACCCTGGGGAACCCCTTGGGGTTACCC
2._RUQ_1634
AACCCTGGGGAACCCCTTGGGGTTACCC
3._RUQ_761
AACCCTGGGGAACCCCTTGGGGTTACCC
4._RUQ_985
AAACCCGGCGACCTCCTTGGGGTTCCCC
5._RUQ_1449
AAACCCGTCGACCCCCTTGGGGTTACCC
6._RUQ_8
AACCCTGGGGAA_CC_GG___CC
7._IMC_11
AACCCTGGGGAA_CC_GG___CC
8._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
9._IMC_14
AACCCTGGGGAA_CC_GG___CC
10._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
11._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
12._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
13._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
14._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
15._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
16._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
17._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
18._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
19._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
20._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
21._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
22._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
23._GC-04-054-3-18
AACCCTGGGGAACCCCCCGGGGTTACCC
24._RUQ_1056
AAACCCGTCGACCCCCTTGGGGTTCCCC
25._GC-04-029-2-11
AA_CTGGGGAACCCCCCGGGGTTACCC
26._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
27._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
 2930313233343536373839404142
_Input profile
CCCCAACCCTGGGGTTGTTTCCTTGGAG
1._RUQ_8
CCCCAACCCTGGGGTTGTTTCCTTCGAG
2._RUQ_1634
CCCCAACCCTGGGGTTGTTTCCTTCGAG
3._RUQ_761
CCCCAACCCTGGGGTTGTTTCCTTCGAG
4._RUQ_985
CCCCAACCCTGGGGTTGTCTCCTTGGAG
5._RUQ_1449
CCCCAACCCTGGGGTTGTCTCCTTGGAG
6._RUQ_8
_CCAA_CT___GT__TTCGAG
7._IMC_11
_CCAA_CT___GT__TTCGAG
8._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
9._IMC_14
_CCAA_CT___GT__TTCGAG
10._GC-03-030-3-09
CCCCAACCCTGGGGTTGT__TTCGAG
11._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
12._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
13._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
14._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
15._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
16._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
17._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
18._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
19._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
20._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
21._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
22._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
23._GC-04-054-3-18
CCCCAACCCTGGGGTTGTTTCCTTCGAG
24._RUQ_1056
CCTTAACCCCGGGGTTGTTTCCTTGGAG
25._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
26._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG
27._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG

Input profile: IMC_85 RUQ_1666

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_11 RUQ_8

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_14 RUQ_1634

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_6 RUQ_761

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_20 RUQ_985

93.9 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._IMC_31 RUQ_1449

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._IMC_11 RUQ_8

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._IMC_11

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

8._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._IMC_14

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

10._IMC_14 GC-03-030-3-09

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._IMC_14 GC-03-030-3-09

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

18._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

23._IMC_14 GC-04-054-3-18

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._IMC_67 RUQ_1056

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._IMC_11 GC-04-029-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

26._IMC_14 GC-03-030-3-09

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._IMC_14 GC-03-030-3-09

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484